Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs2112799 chr19:56161206 C/T 2.72E-5 362 22.3 23.88 9.37 KM Plot
CRC rs2132871 chr12:59964466 C/T 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs2132873 chr12:59974039 C/T 1.28E-5 374 24.93 18.52 10.4 KM Plot
CRC rs2198391 chr7:62047108 C/T 8.38E-6 365 23.1 20.23 14.37 KM Plot
CRC rs2198392 chr7:62046004 A/G 1.44E-6 358 24.33 19.87 11.27 KM Plot
CRC rs2198402 chr7:62021991 C/A 4.88E-7 362 22.83 20.27 11.27 KM Plot
CRC rs2198405 chr7:62000813 G/A 8.37E-7 364 22.67 20.38 11.27 KM Plot
CRC rs2198409 chr7:61990474 C/T 7.43E-7 364 22.53 20.3 11.27 KM Plot
CRC rs2198411 chr7:61986831 G/A 7.43E-7 364 22.53 20.3 11.27 KM Plot
CRC rs2198435 chr7:62068010 C/A 5.79E-12 365 23.37 20.27 10.22 KM Plot
CRC rs2213284 chr6:26031868 G/A 5.4E-5 370 18.5 25.18 20.4 KM Plot
CRC rs2219027 chr7:62022459 G/A 7.73E-7 367 23.37 20.23 11.27 KM Plot
CRC rs2219056 chr7:62095451 C/T 3.59E-5 369 24.47 19.87 17.47 KM Plot
CRC rs2232679 chr13:28196033 G/C 1.33E-5 363 23.6 19.87 14.37 KM Plot
CRC rs2252518 chr12:52381026 C/A 3.36E-5 361 22.83 24.47 16.47 KM Plot